| Protein ZmLBD17 | |
|---|---|
|
ZmLBD17 is a protein in the LBD family.
|
|
| Information | |
| TF Name: | ZmLBD17 |
| Species: | Maize |
| TF Family: | LBD |
| Gene Name(Synonym): | LBD17 |
| Uniprot ID: | A0A1D6PDQ1 |
| Subgenome: | 1 |
Protein ZmLBD17
ZmLBD17 is a protein in the LBD family. NOTE the "Uniprot ID" shown on the right is a placeholder for testing. The interactive structure shown is based on that id.
| Overview of domains present in v5 transcripts | |
|---|---|
| PF03195 | |
| Zm00001eb125420_T001 |  |
Protein-DNA Interactions
Meme Logos for Maize v4 Gene IDs
| Gene ID | Type | MEME Logo | Sequence | FIMO | Position |
|---|---|---|---|---|---|
| Zm00001d040004 | DAPseq |  |
sequence | fimo | position |
| Zm00001d040004 | DAPseq |  |
sequence | fimo | position |
| Zm00001d040004 | ChIPseq |  |
sequence | fimo | position |
| Zm00001d040004 | PChIPseq |  |
sequence | fimo | position |
Interactions where ZmLBD17 is the regulator
Interactions where ZmLBD17 is the target
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Zm00001eb125420_T001 from maize genome v5
Amino Acid Sequence
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MRMSCNGCRVLRKGCSDNCAIRPCLQWIRSPDAQGNATVFLAKFYGRAGLINLITAGPEHVRPAIFRSLLYEACGRMLNP
VYGSVGLLWSGNWQLCQAAVESVLRGIPIAQPPPTATAVPPLRSCDIRHVARREAGRGAVDAGLHRMANSSRGQFKRSGA
QHRSADSGSIELVFSQPSAASSMLVDIRQAQPLNWAPRHPSPHQYYSASHDDDAVRESDDSKASVDTVDVSHVSQSEPAE
PPRESNERADGLDLTLGLPPTAHKVERLETSSDVDDDQTSHRGEPTKLGFAMADSRAR
MRMSCNGCRVLRKGCSDNCAIRPCLQWIRSPDAQGNATVFLAKFYGRAGLINLITAGPEHVRPAIFRSLLYEACGRMLNP
VYGSVGLLWSGNWQLCQAAVESVLRGIPIAQPPPTATAVPPLRSCDIRHVARREAGRGAVDAGLHRMANSSRGQFKRSGA
QHRSADSGSIELVFSQPSAASSMLVDIRQAQPLNWAPRHPSPHQYYSASHDDDAVRESDDSKASVDTVDVSHVSQSEPAE
PPRESNERADGLDLTLGLPPTAHKVERLETSSDVDDDQTSHRGEPTKLGFAMADSRAR
MRMSCNGCRVLRKGCSDNCAIRPCLQWIRSPDAQGNATVFLAKFYGRAGLINLITAGPEHVRPAIFRSLLYEACGRMLNP
VYGSVGLLWSGNWQLCQAAVESVLRGIPIAQPPPTATAVPPLRSCDIRHVARREAGRGAVDAGLHRMANSSRGQFKRSGA
QHRSADSGSIELVFSQPSAASSMLVDIRQAQPLNWAPRHPSPHQYYSASHDDDAVRESDDSKASVDTVDVSHVSQSEPAE
PPRESNERADGLDLTLGLPPTAHKVERLETSSDVDDDQTSHRGEPTKLGFAMADSRAR
MRMSCNGCRVLRKGCSDNCAIRPCLQWIRSPDAQGNATVFLAKFYGRAGLINLITAGPEHVRPAIFRSLLYEACGRMLNP
VYGSVGLLWSGNWQLCQAAVESVLRGIPIAQPPPTATAVPPLRSCDIRHVARREAGRGAVDAGLHRMANSSRGQFKRSGA
QHRSADSGSIELVFSQPSAASSMLVDIRQAQPLNWAPRHPSPHQYYSASHDDDAVRESDDSKASVDTVDVSHVSQSEPAE
PPRESNERADGLDLTLGLPPTAHKVERLETSSDVDDDQTSHRGEPTKLGFAMADSRAR
MRMSCNGCRVLRKGCSDNCAIRPCLQWIRSPDAQGNATVFLAKFYGRAGLINLITAGPEHVRPAIFRSLLYEACGRMLNP
VYGSVGLLWSGNWQLCQAAVESVLRGIPIAQPPPTATAVPPLRSCDIRHVARREAGRGAVDAGLHRMANSSRGQFKRSGA
QHRSADSGSIELVFSQPSAASSMLVDIRQAQPLNWAPRHPSPHQYYSASHDDDAVRESDDSKASVDTVDVSHVSQSEPAE
PPRESNERADGLDLTLGLPPTAHKVERLETSSDVDDDQTSHRGEPTKLGFAMADSRAR
| Secondary Structure Color Code | |
|---|---|
| BEND | region with high backbone curvature without specific hydrogen bonding |
| HELX_LH_PP_P | left-handed polyproline helix |
| HELX_RH_3T_P | right-handed 3-10 helix |
| HELX_RH_AL_P | right-handed alpha helix |
| HELX_RH_PI_P | right-handed pi helix |
| STRN | beta strand |
| TURN_TY1_P | type I turn |
| UNDETERMINED | no data available |
| Domains Present | |
|---|---|
| PF03195 |
|
| Hover here to show all domains | |
Nucleotide Sequence
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ACGCGCACACTACAACAGTACCACG...
ACGCGCACACTACAACAGTACCACGCCATTCCGGTCTCTGCCCGTCTCCTTCCTCGAGCTAGCGGCTAGCGCCGGTGACTCGACCGGTGAGGCCAGGATCCTTGGCTCGAAGAAGCGATTGAGCACCACCACACGGGGTTATAGACGAAGGATCCAGGATGCGGATGAGCTGCAACGGGTGCCGCGTGCTTCGCAAGGGGTGCAGCGACAACTGCGCCATCCGGCCGTGCTTGCAGTGGATCCGCAGCCCCGACGCGCAGGGCAACGCCACCGTCTTCCTCGCCAAGTTCTACGGCCGCGCAGGCCTCATCAACCTCATCACCGCCGGCCCCGAACACGTCCGACCCGCAATATTCCGGTCTCTGTTGTACGAGGCTTGCGGCCGCATGCTCAACCCGGTGTACGGCTCGGTCGGCTTGCTCTGGTCCGGGAACTGGCAGCTTTGCCAGGCGGCCGTCGAGTCGGTCCTCCGCGGCATACCCATCGCGCAGCCGCCGCCCACCGCCACGGCTGTCCCGCCTCTCCGGTCGTGCGACATCCGCCACGTCGCCAGGAGGGAGGCAGGCCGCGGCGCCGTGGATGCCGGCCTCCACCGAATGGCCAACAGCTCGCGGGGGCAGTTCAAGCGATCCGGCGCCCAGCACAGATCCGCAGACTCCGGCAGCATCGAGCTCGTCTTCTCCCAGCCGTCGGCGGCTTCGTCCATGCTGGTCGACATCCGACAGGCGCAGCCACTGAACTGGGCGCCACGCCATCCAAGCCCCCACCAGTACTACTCCGCAAGCCACGACGACGACGCCGTGCGTGAGAGCGACGACAGCAAAGCCTCGGTGGACACCGTGGATGTCTCTCATGTCAGTCAGTCCGAACCCGCGGAGCCACCGAGAGAAAGCAATGAGCGGGCGGATGGTCTAGACCTCACACTAGGTCTGCCACCGACTGCGCACAAGGTCGAGAGACTCGAGACGTCGTCAGACGTTGACGACGACCAGACTTCTCACAGAGGCGAGCCGACGAAGCTCGGCTTCGCCATGGCGGATTCTCGAGCTAGATAATGAAATCGTTGGATATACTACTCATCCGATCGATCGACAGGGAGTTTTGATTGCCTGGAACTCGTTTATGTCTTAATTTGTAGTTCTGTAGGGGTGGCTATATATGGTGTTTTCTAGTTTTGGAAACTGTAACAACAGTGTGTGCCCTCTTTTTTTTGCATTT
GRMZM2G132693_T01 from maize genome v3
Amino Acid Sequence
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MRMSCNGCRVLRKGCSDNCAIRPCLQWIRSPDAQGNATVFLAKFYGRAGLINLITAGPEHVRPAIFRSLLYEACGRMLNP
VYGSVGLLWSGNWQLCQAAVESVLRGIPIAQPPPTATAVPPLRSCDIRHVARREAGRGAVDAGLHRMANSSRGQFKRSGA
QHRSADSGSIELVFSQPSAASSMLVDIRQAQPLNWAPRHPSPHQYYSASHDDDAVRESDDSKASVDTVDVSHVSQSEPAE
PPRESNERADGLDLTLGLPPTAHKVERLETSSDVDDDQTSHRGEPTKLGFAMADSRAR
Nucleotide Sequence
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CCGGTGACTCGACCGGTGAGGCCAG...
CCGGTGACTCGACCGGTGAGGCCAGGATCCTTGGCTCGAAGAAGCGATTGAGCACCACCACACGGGGTTATAGACGAAGGATCCAGGATGCGGATGAGCTGCAACGGGTGCCGCGTGCTTCGCAAGGGGTGCAGCGACAACTGCGCCATCCGGCCGTGCTTGCAGTGGATCCGCAGCCCCGACGCGCAGGGCAACGCCACCGTCTTCCTCGCCAAGTTCTACGGCCGCGCAGGCCTCATCAACCTCATCACCGCCGGCCCCGAACACGTCCGACCCGCAATATTCCGGTCTCTGTTGTACGAGGCTTGCGGCCGCATGCTCAACCCGGTGTACGGCTCGGTCGGCTTGCTCTGGTCCGGGAACTGGCAGCTTTGCCAGGCGGCCGTCGAGTCGGTCCTCCGCGGCATACCCATCGCGCAGCCGCCGCCCACCGCCACGGCTGTCCCGCCTCTCCGGTCGTGCGACATCCGCCACGTCGCCAGGAGGGAGGCAGGCCGCGGCGCCGTGGATGCCGGCCTCCACCGAATGGCCAACAGCTCGCGGGGGCAGTTCAAGCGATCCGGCGCCCAGCACAGATCCGCAGACTCCGGCAGCATCGAGCTCGTCTTCTCCCAGCCGTCGGCGGCTTCGTCCATGCTGGTCGACATCCGACAGGCGCAGCCACTGAACTGGGCGCCACGCCATCCAAGCCCCCACCAGTACTACTCCGCAAGCCACGACGACGACGCCGTGCGTGAGAGCGACGACAGCAAAGCCTCGGTGGACACCGTGGATGTCTCTCATGTCAGTCAGTCCGAACCCGCGGAGCCACCGAGAGAAAGCAATGAGCGGGCGGATGGTCTAGACCTCACACTAGGTCTGCCACCGACTGCGCACAAGGTCGAGAGACTCGAGACGTCGTCAGACGTTGACGACGACCAGACTTCTCACAGAGGCGAGCCGACGAAGCTCGGCTTCGCCATGGCGGATTCTCGAGCTAGATAATGAAATCGTTGGATATACTACTCATCCGATCGATCGACAGGGAGTTTTGATTGCCTGGAACTCGTTTATGTCTTAATTTGTAGTTCTGTAGGGGTGGCTATATATGGTGTTTTCTAGTTTTGGAAACTGTAACAACAGTGTGTGCCCTCTTTTTTTTGCATTTTTTATGTATGATACACCGTTTCTTGATGTGTTCTTCCCACTATATTTTAA
Zm00001d040004_T001 from maize genome v4
Amino Acid Sequence
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MRMSCNGCRVLRKGCSDNCAIRPCLQWIRSPDAQGNATVFLAKFYGRAGLINLITAGPEHVRPAIFRSLLYEACGRMLNP
VYGSVGLLWSGNWQLCQAAVESVLRGIPIAQPPPTATAVPPLRSCDIRHVARREAGRGAVDAGLHRMANSSRGQFKRSGA
QHRSADSGSIELVFSQPSAASSMLVDIRQAQPLNWAPRHPSPHQYYSASHDDDAVRESDDSKASVDTVDVSHVSQSEPAE
PPRESNERADGLDLTLGLPPTAHKVERLETSSDVDDDQTSHRGEPTKLGFAMADSRAR
Nucleotide Sequence
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ACGCGCACACTACAACAGTACCACG...
ACGCGCACACTACAACAGTACCACGCCATTCCGGTCTCTGCCCGTCTCCTTCCTCGAGCTAGCGGCTAGCGCCGGTGACTCGACCGGTGAGGCCAGGATCCTTGGCTCGAAGAAGCGATTGAGCACCACCACACGGGGTTATAGACGAAGGATCCAGGATGCGGATGAGCTGCAACGGGTGCCGCGTGCTTCGCAAGGGGTGCAGCGACAACTGCGCCATCCGGCCGTGCTTGCAGTGGATCCGCAGCCCCGACGCGCAGGGCAACGCCACCGTCTTCCTCGCCAAGTTCTACGGCCGCGCAGGCCTCATCAACCTCATCACCGCCGGCCCCGAACACGTCCGACCCGCAATATTCCGGTCTCTGTTGTACGAGGCTTGCGGCCGCATGCTCAACCCGGTGTACGGCTCGGTCGGCTTGCTCTGGTCCGGGAACTGGCAGCTTTGCCAGGCGGCCGTCGAGTCGGTCCTCCGCGGCATACCCATCGCGCAGCCGCCGCCCACCGCCACGGCTGTCCCGCCTCTCCGGTCGTGCGACATCCGCCACGTCGCCAGGAGGGAGGCAGGCCGCGGCGCCGTGGATGCCGGCCTCCACCGAATGGCCAACAGCTCGCGGGGGCAGTTCAAGCGATCCGGCGCCCAGCACAGATCCGCAGACTCCGGCAGCATCGAGCTCGTCTTCTCCCAGCCGTCGGCGGCTTCGTCCATGCTGGTCGACATCCGACAGGCGCAGCCACTGAACTGGGCGCCACGCCATCCAAGCCCCCACCAGTACTACTCCGCAAGCCACGACGACGACGCCGTGCGTGAGAGCGACGACAGCAAAGCCTCGGTGGACACCGTGGATGTCTCTCATGTCAGTCAGTCCGAACCCGCGGAGCCACCGAGAGAAAGCAATGAGCGGGCGGATGGTCTAGACCTCACACTAGGTCTGCCACCGACTGCGCACAAGGTCGAGAGACTCGAGACGTCGTCAGACGTTGACGACGACCAGACTTCTCACAGAGGCGAGCCGACGAAGCTCGGCTTCGCCATGGCGGATTCTCGAGCTAGATAATGAAATCGTTGGATATACTACTCATCCGATCGATCGACAGGGAGTTTTGATTGCCTGGAACTCGTTTATGTCTTAATTTGTAGTTCTGTAGGGGTGGCTATATATGGTGTTTTCTAGTTTTGGAAACTGTAACAACAGTGTGTGCCCTCTTTTTTTTGCATTTTTTATGTATGATACACCGTTTCTTGATGTGTTCTTCCCACTATATTTTAAGGGGATGTTTGGTTTATAGGGACTAATGTTTAGTCCCT
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